The Galapagos sea lion (Zalophus wollebaeki) is an endemic and endangered species that plays a vital role in the ecosystem dynamics of the archipelago. In recent decades, they have faced a significant population decline, related to the effects of climate variability and anthropogenic influences. Thus, the co-occurrence of sea lion resting areas with mosquito breeding sites and the presence of free-roaming domestic dogs present significant health risks related to parasite transmission. This research demonstrates the occurrence of Dirofilaria immitis (canine heartworm) in Z. wollebaeki, indicating their possible function as a definitive host for this parasite. Blood samples collected in August 2023 from 50 individuals (juveniles and adults) in 2 rookeries of San Cristóbal Island, revealed a 2% prevalence of D. immitis in juvenile females, as confirmed by Knott’s test and polymerase chain reaction analysis. Results of this work emphasize the critical necessity for effective monitoring and conservation strategies to address the threat posed by D. immitis and to safeguard this endangered species.