The full understanding of the parasite fauna of a host species requires sampling individuals across their entire distribution range. However, very few studies include an analysis considering such geographical coverage. The Ocellated killifish, Floridichthys polyommus, is an endemic estuarine fish whose distribution spans from the southwestern Gulf of Mexico to Belize. Here, we aimed at describing the metazoan parasite fauna of F. polyommus in localities across the Yucatán Peninsula to assess the parasite species richness at regional and local scales. From 2022 to 2024, 409 specimens of F. polyommus were collected from six localities. Data from three localities from a previous study were also included. Individuals were dissected, and examined for ecto and endoparasites. Twenty-four metazoan parasite taxa were identified using morphological characters and/or molecular data. Thirteen parasite taxa correspond to larval stages. Nine parasite taxa represent new host records, increasing to 35 the total number of metazoan parasites known for F. polyommus. The nematode Contracaecum sp. was found in all sampled localities, whereas the cestode Glossocercus caribaensis and the copepod Ergasilus sp. were found in seven, with variable prevalence and mean intensity of infection values. Two general patterns were uncovered irrespective of the geographical scale of the analyses (local or regional): (1) Digeneans were the most species-rich parasite group and (2) F. polyommus harboured more larval parasite taxa than adults. It seems that the parasite fauna of the Ocellated killifish in each sampling site represent a subsample of the total species richness at the regional level.