Monitoring wildlife populations in vast, remote landscapes poses significant challenges for conservation and management, particularly when studying elusive species that range across inaccessible terrain. Traditional survey methods often prove impractical or insufficient in such environments, necessitating innovative technological solutions. This study evaluates the effectiveness of deep learning for automated Bactrian camel detection in drone imagery across the complex desert terrain of the Gobi Desert of Mongolia. Using YOLOv8 and a dataset of 1479 high-resolution drone-captured images of Bactrian camels, we developed and validated an automated detection system. Our model demonstrated strong detection performance with high precision and recall values across different environmental conditions. Scale-aware analysis revealed distinct performance patterns between medium- and small-scale detections, informing optimal drone flight parameters. The system maintained consistent processing efficiency across various batch sizes while preserving detection quality. These findings advance conservation monitoring capabilities for Bactrian camels and other wildlife in remote ecosystems, providing wildlife managers with an efficient tool to track population dynamics and inform conservation strategies in expansive, difficult-to-access habitats.