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Outside of our fellow mammals, our next closest relatives are reptiles. As both birds and mammals are warm blooded (endothermic) and have four-chambered hearts, one might be tempted to think that the sister group to mammals would be birds. But the story is much more complicated than that, especially because birds are actually reptiles.
Reptiles include four main lineages: (1) turtles, (2) lizards and snakes, (3) crocodilians, and (4) dinosaurs, including birds. Indeed, birds are reptiles – birds are a surviving lineage descended from bipedal predatory dinosaurs! In decades past, there were five “classes” of vertebrates (animal groups with backbones): fishes, amphibians, mammals, reptiles, and birds. In fact, many basic treatments still list these groups. For example, Encyclopedia Britannica still has an article entitled: “Five Vertebrate Groups.” But there are major problems with two of these old groups: neither fishes nor scaly reptiles are monophyletic.
I have argued that one of the major misconceptions about evolution and the tree of life is that some species or lineages are considered more “primitive” than others – this chapter will delve more deeply into this misconception and one of its key causes. Across the tree of life, certain lineages – including the platypus, lungfishes, and mosses – are frequently labeled as more primitive than other members of their groups. Mammals provide several good case studies demonstrating the reasons for this longstanding misperception. Researchers, journalists, and filmmakers all seem obsessed with discussing certain lineages that somehow seem primitive to them. This misconception about primitive lineages is problematic for two major reasons. First, it leads to a general misunderstanding of evolution, which can lead to fundamental misunderstandings across all of biology, including human health.
Fossils provide a unique window into how evolution has unfolded. In particular, transitions in the fossil record provide compelling evidence for how major evolutionary changes have happened. One of the most well-known transitions is from fish-like vertebrates to the first land vertebrates – our earliest tetrapod ancestors. (The word tetrapod refers to the groups of vertebrates with four legs, namely mammals, reptiles, and amphibians.) Paleontologists had known that transitional fossils connecting aquatic and terrestrial vertebrates must exist. There were abundant fossils of vertebrates with fins from around 400 mya, and there were abundant fossils of terrestrial tetrapods with limbs from around 350 mya. But key fossils were missing – those that could show details of how the evolutionary crawl onto land had occurred.
If we think of ourselves as the “highest” forms of life, we often think of Bacteria as the “lowest” forms of life. We also think of Bacteria as ancient, “primitive,” and ancestral. As discussed for many other extant branches of the tree of life, these views are misleading. But these views may be especially hard to jettison when thinking of Bacteria – aren’t they more ancestral than we are? But we must always come back to this idea: Bacteria are not our ancestors – they are extant cousins. As will be detailed below, all lineages of organisms descended from the LUCA; the major lineages of life did not descend from Bacteria.
The clade Bacteria includes species that are ecologically essential (e.g., as decomposers that impact the carbon cycle) and that comprise key organisms of our microbiome (e.g., the symbiotic Bacteria normally found on our skin and in our digestive tracts). Bacteria also cause many diseases, including stomach ulcers (Helicobacter pylori), tetanus (Clostridium tetani), and acne (Cutibacterium acnes).
This chapter begins with the strong statement that fish do not exist as a true evolutionary group. Of the five traditional “classes” of vertebrates, fishes are the most problematic. The concept “fish” is wildly paraphyletic. In contrast, extant amphibians form a monophyletic clade. Mammals are also a true evolutionary group. In the previous chapter we learned that the former paraphyletic group Reptilia can be fixed by recognizing that birds are reptiles.
But there is no simple fix for fishes. One possible solution is to say that all tetrapods are fishes too. In other words, you and I and frogs and birds would all be fishes. That could work and it does reflect true evolutionary relationships, but it makes the former concept fishes fairly useless. Another solution is to recognize at least six separate lineages as distinct monophyletic groups.
For decades, biologists have assumed that our most distant animal cousins were sponges (Porifera). This seemed to make a lot of sense, because sponges are very different from us and from all other animals. Sponges do not have different types of tissues, such as skin, muscles, and nerves. Their colonies of cells form the colorful but irregular shapes that are common on coral reefs. There is no way to cut a sponge into two equal halves – adult sponges are asymmetrical. Surely animals such as this must be very distantly related to us, no? (Note that for this chapter, I have switched things up to talk about our most distant animal relatives first.)
But beginning around 2010, new data began to emerge suggesting that another group of animals, the comb jellies, might be our most distant animal relatives. Comb jellies, also known as ctenophores (Ctenophora), are aquatic organisms with generally translucent gel-filled bodies.
According to Aristotle and Linnaeus, there were only two “kingdoms” – Plantae and Animalia. In the 1800s, Haeckel carved kingdom “Protista” off of Linnaeus’ Plantae. Kingdoms for Fungi and Bacteria (Monera) were later added. By the time I was in secondary school, I learned a five-kingdom system. The five “kingdoms” that I learned are still frequently used in biology lessons: animals, plants, fungi, protists, and bacteria. But we now know that a five-kingdom story is so simplified as to be misleading, and it tells us very little about the broad tree of life. Back then, in the 1900s, our limited understanding made things seem more simple, but recent DNA sequence data indicate that the groupings are much more complex.
The five-kingdom system was first proposed in 1969. (1) Animalia were multicellular creatures that eat other organisms. (2) Fungi were generally multicellular decomposers that fed by a network of filamentous cells. (3) Plantae included especially the land plants.
Chimpanzees are not our ancestors! Rather, they are our closest living cousins. Approximately 7 mya there was a species of ape in Africa, the common ancestor that you and I share with the chimps. That species was not a chimpanzee – we know that thousands of changes in DNA have occurred in the descendant lineages since that ancestor. And many resulting skeletal and biological changes have occurred in both the human lineage and the chimpanzee lineage since that ancestor.
The idea that humans descended from chimpanzees is one of the most common misconceptions about evolution. The notion that we evolved from chimps fits well with the concept of the ladder of progress. We might think that chimpanzees are more “primitive” than we are, so if evolution were a progression toward more “advanced” forms, then we might think that the other living apes evolved first, and that we evolved from those apes. We might think that chimpanzees and gorillas are older species, and that Homo sapiens is a younger species that evolved more recently.
Imagine looking out on the plains of Africa sometime several hundred thousand years ago. You see a group of people – perhaps a family group with grandparents, parents, adolescents, and younger children. You can sense their connection to you – they are fellow humans and you recognize the key features that we all share today. Perhaps some of them are sharing meat from a gazelle they have killed. Others might be gathering fruit or seeds. The children might be running around chasing one another. Imagine a young woman in that clan, perhaps in her early twenties. She could be a woman that you and I and every other living human can trace our ancestry back to. Such a woman lived in East Africa approximately 150,000 years ago; she is a common ancestor that you and I share, along with every other human currently alive on Earth. We all inherited a key piece of our DNA from her. This is a segment of DNA that you inherited from your mother, and she from her mother, and she from her mother … all the way back to this woman who lived perhaps in present-day Kenya, Tanzania, or Ethiopia. She has been nicknamed “mitochondrial Eve.”
All species on Earth share common ancestry – we are all part of the same family tree. The tree of life is a representation of how all those species are related to one another. All living species on Earth are the product of billions of years of evolution, so all are evolutionary equals in that way. However, we tend to think of life in a hierarchical way. We think there are lower animals and higher animals. We may incorrectly think that species of bacteria are old and primitive, and that humans are recent and advanced. Many news articles about evolution can feed into the perceptions that some species are younger, more advanced, or more evolved. But all of those perceptions are misleading. Each of these present-day species are our evolutionary cousins. All species alive today are the product of the same 3.5 billion years of evolutionary change, each adapting to their own environment. (Note that species are the units of evolution, frequently defined based on the distinctiveness of their appearance and genetics, and often on their ability to interbreed and produce fertile offspring.)
In many areas of The Gambia, West Africa, population crowding in a degraded environment has forced close interactions of diurnal primate species with humans. We assessed intestinal parasitic infection prevalence and diversity in 4 diurnal non-human primate (NHP) species, Chlorocebus sabaeus, Erythrocebus patas, Papio papio and Piliocolobus badius across 13 sampling sites. The effect of human activity, determined by the human activity index, and NHP group size on parasite richness was assessed using a generalized linear mixed model (GLMM). The most common protozoa identified were Entamoeba coli (30%) and Iodamoeba buetschlii (25%). The most common helminths were Strongyloides fuelleborni (11%), Oesophagostomum spp. (9%) and Trichuris trichiura (9%). Two of six (6%) Cyclospora spp. infections detected sequenced as Cyclospora cercopitheci (both in C. sabaeus). The more arboreal P. badius trended towards a lower prevalence of intestinal parasites, although this was not statistically significant (χ2P = 0.105). Human activity or group size did not have any significant effect on parasite richness for P. badius (P = 0.161 and P = 0.603) or P. papio (P = 0.817 and P = 0.607, respectively). There were insufficient observations to fit a GLMM to E. patas or C. sabaeus. Our reports present the richness and diversity of intestinal parasites in 4 diurnal NHPs in The Gambia, West Africa. Despite desertification and habitat loss, our results indicate that the prevalence and diversity of intestinal parasites in Gambian NHPs are seemingly unaffected by human activity. Further investigation with a larger dataset is required to better elucidate these findings.
The COVID-19 pandemic led to unprecedented lockdowns with rippling impacts on the lives of humans and animals alike. Since zoos were among the first institutions to close during the pandemic, the lockdowns presented the opportunity to conduct a natural experiment examining the relationship between visitor presence and the welfare of zoo-housed animals. In this study, we assessed the welfare of six Sumatran orangutans (Pongo abelii) at Toronto Zoo both during and following the pandemic lockdowns. We compared behavioural and physiological indicators of welfare during a lockdown and after visitors were reintroduced. Specifically, if the orangutans’ welfare was affected by the visitor re-introduction phase we predicted there would be an increase in the following measures: (1) use of exhibit areas away from visitors; (2) behavioural measures (hiding, self-directed behaviours, agonistic behaviours, agitated movement, and idiosyncratic object-directed behaviours [head slamming, and fabric tearing]); and (3) physiological measures (faecal consistency and glucocorticoid metabolites) when compared to the lockdown. We also measured changes in activity levels such as foraging and inactivity. We found that orangutan exhibit space use did not change when visitors were reintroduced. In fact, the orangutans hid less when visitors were introduced than during the lockdown. Foraging, inactivity, and other behavioural indicators of stress did not change when visitors were introduced. Similarly, neither faecal consistency nor glucocorticoid metabolites changed across the study phases. Our data show that visitor re-introduction did not negatively affect the welfare of the Toronto Zoo orangutans. However, the presence of keepers was found to affect the behaviour of the orangutans and warrants further study.
For any form of communication to make it beyond the category of talking to oneself, at least two individuals must share a common lexicon. Before languages can evolve into more complex forms, there must first be a pragmatic sense in which one individual can communicate a basic idea to another. How might shared lexicons have originated? Standard explorations of language often look in well-connected social groups such as chimpanzees, frequently numbering in the tens of individuals. But we might ask if language perhaps didn’t begin in a more humble arrangement, involving social groups of just two or a few individuals, such as that found in the orangutan? Agent-based models combined with network science offer a way to study this problem. By treating nodes as agents with strict rule-based behavior and edges as opportunities for interaction, agent-based models provide frameworks for studying how behavior and connectivity interact to create emergent phenomenon, such as the evolution of cooperation and cultural change. Here we will explore an agent-based model of the naming game to address how structure influences the emergence of shared lexicons.
As an anthropogenic creation, plastic pollution is a form of human–wildlife interaction and an emerging conservation threat to a growing number of species in both terrestrial and marine environments. Although plastic pollution has spread worldwide and a growing body of literature shows its effects on human health, little is known about its impact on our closest living relatives, nonhuman primates, and their habitats. With over 60% of primate species already under threat of extinction, plastic pollution in their habitats poses a unique problem, exposing them to physical harm, synthetic chemicals, and pathogens through ingestion, entanglement, and oral manipulation. Moreover, through its presence in soil, air, and waterways, plastic pollution leads to environmental degradation and reduces the quality and ecological functionality of primate habitats. This perspective article covers what is known so far about plastic pollution as a conservation threat to nonhuman primates. It is a call for primatologists to address plastic pollution in our research and conservation initiatives. By collecting data on plastic pollution’s presence and assessing its impact on primates and their habitats, we can develop safe protocols and prevention strategies to combat the threat of plastic pollution in the Anthropocene.
The expansion of transportation and service corridors has numerous, well-documented adverse effects on wildlife. However, little research on this topic has been translated into mitigating the effects of habitat fragmentation caused by road development on primates. The establishment of canopy bridges has proven to be an effective conservation intervention. Of the completed primate canopy bridge projects reported in the literature, to our knowledge, all attempt to mitigate the impacts caused by singular, linear infrastructure routes. Here we provide recommendations for the establishment of a network of natural and artificial canopy bridges over roads throughout Langkawi Island, Malaysia, to reduce rates of roadkill and support the movement of primates and other arboreal animals across the island by identifying suitable sites and appropriate tree species to be planted (including Ficus racemosa and Ficus fistulosa), bridge materials and post-installation monitoring. The establishment of this pioneering trans-island canopy bridge network could function as a model to enhance connectivity for arboreal animals in other important wildlife habitat sites in Malaysia and beyond that are affected by fragmentation from linear infrastructure. We have begun discussions with relevant authorities, partners and other pertinent parties, focusing on the initiation of construction of the canopy bridge network in 2024.
Population size and geographical range are the key quantitative criteria used by the IUCN to assess the conservation status of a species. However, such information is often incomplete and inconsistent, even for seemingly abundant species. To assess the population and conservation status of Indian primates, we conducted a systematic review of recent research using the searching, appraisal, synthesis and analysis (SALSA) approach. We reviewed a total of 41 studies on Indian primates conducted during the last 2 decades (2000–2021) for information on various parameters that influence their conservation. We found that 20 out of a total of 26 primate species were evaluated for their population status, and the majority of these studies (71%) showed an overall declining population trend. Remarkably, all but one of the studies conducted exclusively within protected areas revealed declining population trends, whereas trends were more variable for primate populations in non-protected areas. Our data indicate that only 27% (n = 7) of Indian primate species have been surveyed or re-surveyed to assess their population status within the last 5 years. Although threats vary in time and space from species to species, 78% of the studies recorded natural system modifications including habitat loss and fragmentation among the main threats to the survival of Indian primates. Most studies on the population status of Indian primates have either been spatially limited or used outdated methods. We recommend that future studies adopt robust techniques to estimate populations and work across larger geographical scales to develop effective management strategies for the conservation of primates in India.
Capuchin monkeys have rich social relationships and from very young ages they participate in complex interactions with members of their group. Lipsmacking behaviour, which involves at least two individuals in socially mediated interactions, may tell about processes that maintain, accentuate or attenuate emotional exchanges in monkeys. Lipsmacking is a facial expression associated with the establishment and maintenance of affiliative interactions, following under the ‘emotional regulation’ umbrella, which accounts for the ability to manage behavioural responses. We investigated behaviours related to the emitter and to the receiver (infant) of lipsmacking to answer the question of how lipsmacking occurs. In capuchin monkeys, lipsmacking has been previously understood solely as a face-to-face interaction. Our data show that emitters are engaged with infants, looking longer towards their face and seeking eye contact during the display. However, receivers spend most of the time looking away from the emitter and stay in no contact for nearly half of the time. From naturalistic observations of wild infant capuchin monkeys from Brazil we found that lipsmacking is not restricted to mutual gaze, meaning there are other mechanisms in place than previously known. Our results open paths to new insights about the evolution of socio-emotional displays in primates.
Ruffed lemurs (Varecia variegata and Varecia rubra) are categorized as Critically Endangered on the IUCN Red List, and genetic studies are needed for assessing the conservation value of captive populations. Using 280 mitochondrial DNA (mtDNA) D-loop sequences, we studied the genetic diversity and structure of captive ruffed lemurs in Madagascar, Europe and North America. We found 10 new haplotypes: one from the European captive V. rubra population, three from captive V. variegata subcincta (one from Europe and two from Madagascar) and six from other captive V. variegata in Madagascar. We found low mtDNA genetic diversity in the European and North American captive populations of V. variegata. Several founder individuals shared the same mtDNA haplotype and therefore should not be assumed to be unrelated founders when making breeding recommendations. The captive population in Madagascar has high genetic diversity, including haplotypes not yet identified in wild populations. We determined the probable geographical provenance of founders of captive populations by comparison with previous studies; all reported haplotypes from captive ruffed lemurs were identical to or clustered with haplotypes from wild populations located north of the Mangoro River in Madagascar. Effective conservation strategies for wild populations, with potentially unidentified genetic diversity, should still be considered the priority for conserving ruffed lemurs. However, our results illustrate that the captive population in Madagascar has conservation value as a source of potential release stock for reintroduction or reinforcement projects and that cross-regional transfers within the global captive population could increase the genetic diversity and therefore the conservation value of each regional population.
Behavioural and salivary Cortisol responses were measured in hamadryas baboons (Papio hamadryas) (n = 5) undergoing positive reinforcement training (PRT). Compliance was assessed by collecting behavioural data on desirable and undesirable responses during each training session (33-46 training sessions per male). Saliva was collected before implementation of the training programme (3-4 baseline samples per male) and immediately before and ten minutes after a training session (24-53 saliva samples per male). During training, the incidence of leaving the training area, vocalising and threat displays changed across time. Performance of the desired behaviour (holding a target for increasing increments of time) improved for all males during the study period. Concentrations of salivary cortisol were similar for pre-training and post-training collection times, but both were significantly lower than baseline concentrations. The overall decline in undesirable behaviours and the absence of constantly elevated salivary cortisol suggest that PRT had no adverse effects on animal welfare.
A review of the scientific literature gives evidence that transferring previously single-caged adult macaques to permanent compatible pair-housing arrangements (isosexual pairs, adult/infant pairs) is associated with less risk of injury and morbidity than transferring them to permanent group-housing arrangements. Juvenile animals can readily be transferred to permanent group-housing situations without undue risks. Safe pair formation and subsequent pair-housing techniques have been developed for female and male rhesus (Macaca mulatta), stump-tailed (M. arctoides) and pig-tailed macaques (M. nemestrina) as well as for female long-tailed macaques (M. fascicularis). Pair housing does not jeopardize the animals’ physical health but it increases their behavioural health by providing them with an adequate environment to satisfy their need for social contact and social interaction.